Changelog¶
Name |
PR |
Developer |
Date |
Version |
|---|---|---|---|---|
🐛 Fix permission error when screening for local storage root |
2024-06-19 |
|||
🐛 Fix same root check in get_locker |
2024-06-13 |
|||
✨ Add .ome.zarr as composite suffix |
2024-06-05 |
|||
🏗️ Update instance schema in the hub |
2024-06-04 |
|||
⬆️ Migrate to upath 0.2.2 |
2024-06-02 |
|||
🐛 Fix trailing slash in upload_from source |
2024-05-23 |
0.73.0 |
||
🚸 Make |
2024-05-23 |
|||
✨ Resolve s3 bucket region even without access rights |
2024-05-22 |
|||
💚 Coverage fix |
2024-05-22 |
|||
👷 Fix coverage compute |
2024-05-22 |
|||
🐛 Deal with migration errors when keep-artifacts-local is true |
2024-05-20 |
0.72.2 |
||
♻️ Do not error if empty dict in |
2024-05-19 |
0.72.1 |
||
🐛 Keep training slash in aws cache keys |
2024-05-19 |
|||
🐛 Check empty after storage record root init in delete |
2024-05-18 |
|||
✨ Call |
2024-05-18 |
0.72.0 |
||
⚡️ Speed-up file hash |
2024-05-11 |
0.71.4 |
||
♻️ Account for public storage locations |
2024-05-10 |
|||
♻️ Make init_instance_hub idempotent |
2024-05-09 |
|||
♻️ Refactor delete & connect |
2024-05-09 |
|||
🔥 Remove laminapp-admin logic |
2024-05-08 |
|||
♻️ Better treatment of current_user_id |
2024-05-06 |
0.71.2 |
||
💚 Fix tests |
2024-05-06 |
|||
♻️ Actually use local db |
2024-05-06 |
0.71.2 |
||
✏️ Restore view_tree py3.9 compatibility |
2024-05-06 |
|||
💚 Pin laminapp-ui |
2024-05-06 |
|||
♻️ Extend valid suffixes to composite suffixes |
2024-05-03 |
0.71.1 |
||
🐛 Fix test failures |
2024-05-03 |
|||
♻️ Persist keep-artifacts-local in settings.env |
2024-05-03 |
|||
✅ Expand tests to multi users for managed storage |
2024-05-03 |
|||
🐛 Fix delete function |
2024-04-30 |
0.71.0 |
||
✨ Manage multiple storage locations with integrity |
2024-04-30 |
|||
✨ Proper progress bars for upload and download |
2024-04-28 |
|||
♻️ Truncate fsspec deps |
2024-04-28 |
|||
♻️ Refactor storage management |
2024-04-27 |
|||
⬆️ Upper and lower bounds for fsspec |
2024-04-27 |
|||
♻️ Capitalize HOSTED |
2024-04-26 |
|||
♻️ Refactor noxfile and manage |
2024-04-25 |
|||
🏷️ Add 3.10 types & ruff |
2024-04-25 |
|||
♻️ Backward compat for older botocore |
2024-04-25 |
|||
✨ Introduce |
2024-04-23 |
0.70.0 |
||
🚚 Make |
2024-04-23 |
|||
🚚 Rename |
2024-04-23 |
|||
🚸 In |
2024-04-22 |
|||
✨ Upload dirs inplace |
2024-04-20 |
0.69.5 |
||
♻️ Do not always read from local cache |
2024-04-19 |
0.69.4 |
||
♻️ Improve suffix handling |
2024-04-19 |
0.69.3 |
||
✨ Enable hybrid storage mode |
2024-04-16 |
0.69.1 |
||
🚸 Better migrations warning |
2024-04-16 |
|||
🚸 Refresh token also upon access-aws |
2024-04-15 |
|||
🚸 Skip hub request for a purely local instance |
2024-04-08 |
0.69.0 |
||
🐛 Fix clashes for multi process |
2024-04-08 |
|||
♻️ No longer need AWS account |
2024-04-08 |
|||
📝 Fix docs |
2024-04-05 |
|||
♻️ Replace TypeVar with TypeAlias |
2024-04-04 |
|||
♻️ Refactor clean up |
2024-04-04 |
|||
🩹 Do bucket injection trick only for s3 |
2024-04-04 |
|||
🚸 Add region param |
2024-04-04 |
|||
🐛 Avoid the error due to deleting the same file by multiple processes |
2024-04-04 |
0.68.5 |
||
🐛 Fix directory uploads for hosted instances |
2024-04-04 |
|||
🚑️ Temp fix for non-hosted buckets |
2024-04-02 |
|||
🍱 Add the scverse spatial hackathon bucket |
2024-03-30 |
|||
♻️ More fine-grained db credentials management |
2024-03-29 |
0.68.2 |
||
✨ |
2024-03-28 |
|||
♻️ Enable to choose skip_suffixes |
2024-03-27 |
0.68.1 |
||
♻️ Refactor GCP compat |
2024-03-26 |
|||
✨ Rework synchronize, support directories |
2024-03-23 |
0.68.0 |
||
🎨 Refactor |
2024-03-20 |
|||
✨ Create utility to delete instance by id in the hub |
2024-03-20 |
|||
🚸 Enforce empty storage during instance deletion |
2024-03-20 |
|||
🐛 Use |
2024-03-18 |
0.67.1 |
||
♻️ Enable easy switching between prod-test and staging-test |
2024-03-17 |
0.67.0 |
||
🚚 Rename deletion functions |
2024-03-15 |
|||
✨ Load |
2024-03-14 |
|||
✨ Create gating function to check for empty storage location |
2024-03-14 |
|||
👷 Use test utilities from |
2024-03-13 |
|||
♻️ Refactor view_tree() |
2024-03-12 |
|||
✨ Add hash_code function |
2024-03-12 |
|||
🎨 Make |
2024-03-11 |
|||
🚚 Rename |
2024-03-09 |
|||
🚸 Restore |
2024-03-08 |
0.66.1 |
||
🐛 Fix hosted regions list |
2024-03-07 |
0.66.0 |
||
🚑️ Fix bionty reload |
2024-03-07 |
|||
🩹 Nicer behavior for same instance |
2024-03-07 |
|||
🏗️ Enable |
2024-03-07 |
|||
🚚 Rename |
2024-03-07 |
|||
👷 Better CI group names |
2024-03-07 |
|||
🛂 Make |
2024-03-06 |
|||
♻️ Move generic hashing and storage utilities from |
2024-03-06 |
|||
♻️ Make |
2024-03-06 |
|||
♻️ Replace |
2024-03-06 |
|||
♻️ Simplify path types & point to hub mono-repo |
2024-03-05 |
|||
🚚 Rename |
2024-03-05 |
|||
♻️ Add |
2024-03-05 |
|||
🩹 Resolve cache_dir in the setter |
2024-03-04 |
|||
♻️ Pass |
2024-02-29 |
0.65.3 |
||
♻️ Allow passing |
2024-02-29 |
|||
✨ Add create_mapper util |
2024-02-19 |
|||
🐛 Fix aws_access calls in CLI |
2024-02-18 |
|||
✏️ pre-commit on all files |
2024-02-17 |
|||
🐛 Use shutil.move to move the sqlite file when changing cache folder |
2024-02-17 |
|||
:speaker: Better error message for differing db dsn |
2024-02-13 |
|||
♻️ Add ability to choose region |
2024-02-07 |
|||
💄 Prettify hosted storage notebooks |
2024-02-05 |
|||
📝 Fix error raising for old deleting env file |
2024-02-05 |
|||
♻️ Check manual credentials in path.fs, actually reuse anon |
2024-02-05 |
|||
⚡️ Speed up lamindb import & loading time |
2024-02-03 |
|||
♻️ Iterate on importdb and exportdb |
2024-02-03 |
|||
♻️ Add backward compat for delete_instance call |
2024-02-03 |
|||
♻️ Refactor loading instances and add test for loading hosted instance |
2024-02-02 |
0.65.1 |
||
♻️ Low-latency storage permission management |
2024-02-02 |
|||
✅ Implement proper integration tests for hosted storage |
2024-02-02 |
|||
🐛 Fix permission error for init of hosted instances |
2024-02-02 |
|||
📝 Add examples to |
2024-02-02 |
|||
♻️ Add using key |
2024-01-30 |
0.65.0 |
||
✨ Enable multiple instances |
2024-01-30 |
|||
🐛 Fix import bionty-base |
2024-01-30 |
|||
💚 Fixes for lamindb |
2024-01-29 |
|||
🎨 Refactor and define hosted storage user journey |
2024-01-29 |
|||
💚 Fix register calls |
2024-01-29 |
|||
🔥 Remove vault |
2024-01-26 |
|||
✨ Introduce create storage |
2024-01-26 |
|||
✨ Add storage client |
2024-01-26 |
|||
💚 Fix tests |
2024-01-26 |
|||
🎨 Move default storages to folders |
2024-01-26 |
|||
🎨 Remove call to |
2024-01-26 |
|||
🐛 Fix option inheritance in create_path and add tests |
2024-01-12 |
|||
✅ Update tests relying on laminhub-rest |
2024-01-12 |
|||
🚚 Rename .bionty to .public |
2024-01-10 |
0.64.2 |
||
🚸 Fix connection timeout |
2024-01-08 |
0.64.1 |
||
🚸 Add anonymous access (now works without login) |
2024-01-06 |
0.64.0 |
||
💚 Fix tests in local hub |
2024-01-05 |
|||
🚚 Migrate foreign key constraint for new hub |
2024-01-05 |
|||
💚 Upgrade to Python 3.10 |
2024-01-05 |
|||
🚚 Prepare a potential migration of the hub to Django |
2024-01-05 |
0.63.1 |
||
♻️ Refactor local sign up |
2024-01-02 |
|||
🎨 Write lamindb version to hub |
2024-01-01 |
0.63.0 |
||
♻️ Do no longer validate uniqueness sqlite |
2023-12-31 |
|||
🐛 Fix bionty settings |
2023-12-22 |
|||
♻️ Adopt SQLite locker to id naming and move |
2023-12-21 |
0.62.0 |
||
🎨 Name |
2023-12-21 |
|||
🐛 Do not unlock cloud sqlite instance on migrate deploy |
2023-12-20 |
|||
🔊 Warn on sync of non-existing paths |
2023-12-20 |
|||
🚸 Silence httpx logger |
2023-12-13 |
0.61.4 |
||
🚸 Detect new schema modules |
2023-12-13 |
0.61.3 |
||
⬆️ Bump supabase to latest version |
2023-12-11 |
0.61.2 |
||
♻️ Defer storage API access to actual access |
2023-12-07 |
0.61.1 |
||
🚸 Enable schema packages that do not start with lnschema_ |
2023-11-28 |
0.61.0 |
||
🚑️ Proper fix for trailing slash in create_path |
2023-11-28 |
|||
🚑️ Fix trailing slash for UPath view_tree |
2023-11-28 |
|||
🔊 Do not print progress by default |
2023-11-25 |
|||
✨ Set cache via LAMIN_CACHE_DIR env variable |
2023-11-25 |
|||
🚚 Centralize progressbar and convert to percentage |
2023-11-24 |
0.60.0 |
||
🔊 Log an error when assertion is false |
2023-11-22 |
|||
🔊 Polish logging in view_tree() |
2023-11-15 |
0.59.1 |
||
🔇 Do not log migrations during init |
2023-11-14 |
|||
♻️ Prettify view_tree |
2023-11-14 |
0.59.0 |
||
🔧 Detect both missing and ahead migrations |
2023-11-14 |
|||
✨ Added check command for dev |
2023-11-13 |
|||
⏪️ Remove reset sources for bionty |
2023-11-10 |
|||
🚚 Move |
2023-11-09 |
0.58.0 |
||
♻️ Refactor |
2023-11-09 |
|||
🎨 Set bionty versionsdir according to settings_dir |
2023-11-09 |
|||
🎨 Raise exceptions |
2023-11-09 |
0.57.3 |
||
✨ Enable using SETTINGS_DIR env variable to use AWS Lambda |
2023-11-05 |
0.57.2 |
||
🚸 Lower |
2023-11-04 |
0.57.1 |
||
🚚 Move CLI to lamindb |
2023-10-30 |
0.57.0 |
||
♻️ Also enable to read db from env variable |
2023-10-26 |
0.56.4 |
||
♻️ Enable to pre-define the instance id |
2023-10-26 |
0.56.3 |
||
🐛 Fix read-only access |
2023-10-26 |
0.56.2 |
||
✨ Set notebook files to be hidden |
2023-10-26 |
0.56.1 |
||
✨ Read db URL from local parameters |
2023-10-26 |
0.56.0 |
||
♻️ Do no longer store the db connection string in hub |
2023-10-25 |
|||
👷 Run vault tests in staging environment |
2023-10-25 |
|||
📌 Unpin vault and move to dev dependencies |
2023-10-20 |
0.55.6 |
||
🔇 Remove hint about registering instance |
2023-10-20 |
|||
✨ Add django interface |
2023-10-20 |
|||
🔥 Do not populate user email in User registry |
2023-10-19 |
0.55 |
||
♻️ Better synching of email address from hub to instance |
2023-10-19 |
|||
🚚 Rename |
2023-10-19 |
0.55.4 |
||
🔥 Remove deploy-server command |
2023-10-19 |
0.55.2 |
||
♻️ Refactor and introduce API key |
2023-10-19 |
|||
✨ Cache management |
2023-10-16 |
0.55.1 |
||
🐛 Fix load after failed load in test-load-lock.ipynb |
2023-10-15 |
|||
💚 Fix CI |
2023-10-13 |
|||
🚚 Rename |
2023-10-13 |
0.55.0 |
||
🔇 Silence logger in main |
2023-10-10 |
|||
💄 Prettify logging |
2023-10-09 |
|||
🚸 Silence loggers in CLI |
2023-10-09 |
|||
🔧 Upper bound Django to 4.3 |
2023-10-09 |
|||
🔒 Enable to generate public read db connection string |
2023-10-05 |
|||
🚸 Allow saving notebooks of other users |
2023-10-04 |
0.54.3 |
||
🔊 Add more logging |
2023-10-04 |
|||
🔒 Enforce compatibility with lamin-vault 0.0.7 |
2023-10-03 |
|||
🐛 Prevent using vault by default when loading an instance |
2023-10-03 |
0.54.2 |
||
🚸 Do not use vault for SQLite instances |
2023-10-02 |
0.54.2 |
||
✅ Complete notebook tests |
2023-10-02 |
0.54.1 |
||
🐛 Fix vault import |
2023-10-01 |
0.54.0 |
||
♻️ Move dependencies to dev |
2023-10-01 |
|||
✨ View schema interactively |
2023-10-01 |
|||
✨ Add notebook save functionality |
2023-10-01 |
|||
✨ Enabling server deployment from CLI |
2023-09-30 |
|||
✨ Manage db connection with vault |
2023-09-29 |
|||
♻️ Refactor optional cloud sqlite locking and unlocking |
2023-09-23 |
|||
✨ Add squashmigrations |
2023-09-22 |
|||
♻️ Do not lock instance on load for laminapp-admin |
2023-09-21 |
0.53.2 |
||
♻️ Refactor lock |
2023-09-20 |
|||
💚 Try to fix noaws test |
2023-09-20 |
|||
📝 Fix loading message of lamindb |
2023-09-17 |
0.53.1 |
||
🔐 Change lock expiration time to 1 day |
2023-09-17 |
|||
🐛 Unlock load on error |
2023-09-17 |
|||
🚚 Migrate to new hub prod URL |
2023-09-17 |
|||
👷 Dispatch tests |
2023-09-15 |
0.53.0 |
||
🎨 Streamline login |
2023-09-14 |
|||
🎨 Use a fallback for the hub API in case we move the endpoint |
2023-09-13 |
|||
✨ Enable to prefix settings in any env |
2023-09-12 |
|||
⚡️ Speed up query for instance retrieval |
2023-09-11 |
|||
🎨 Do not add laminapp-admin to the instance user table |
2023-09-11 |
|||
♻️ Simplify & speed up load instance |
2023-09-11 |
|||
🔊 Show more info about the locking user |
2023-09-09 |
|||
♻️ Make two dev modules public, clean up workflow, noxfile, test session names |
2023-09-08 |
0.52.0 |
||
♻️ Do not hard-code laminhub-rest path |
2023-09-08 |
|||
♻️ Move supabase docker from nox to conftest |
2023-09-08 |
|||
♻️ Refactor hub tests |
2023-09-08 |
|||
♻️ Streamline hub interactions, speed up hub testing |
2023-09-07 |
|||
✅ Add test for loading instance after private public switch |
2023-09-07 |
|||
♻️ Refactor hub client |
2023-09-07 |
|||
♻️ Cache user UUID |
2023-09-06 |
|||
♻️ Type instance id as UUID |
2023-09-06 |
|||
✅ Test implicit lamindb load |
2023-09-06 |
|||
🚚 Rename lnhub-rest to laminhub-rest |
2023-09-06 |
|||
✅ More tests for signup |
2023-09-06 |
|||
✅ Test logger |
2023-09-06 |
|||
👔 Always let permission query from hub override local cache for remote instances |
2023-09-06 |
|||
♻️ Re-organize unit tests, hub client & fix signup logging |
2023-09-06 |
|||
👷 Re-organize tests |
2023-09-06 |
|||
🚸 Add env prefix to BaseSettings |
2023-09-05 |
|||
🔧 Narrow |
2023-09-05 |
|||
🔥 Remove legacy settings dir port code |
2023-09-05 |
|||
🚸 Cache instance id during init already |
2023-08-31 |
0.51.3 |
||
🚸 Cache instance id during |
2023-08-30 |
0.51.2 |
||
♻️ Refactor to use UPath everywhere |
2023-08-29 |
0.51.1 |
||
🔥 Remove deprecated locker code |
2023-08-28 |
|||
🚸 Implement delimiter validation during |
2023-08-25 |
|||
♻️ Refactor notebook update |
2023-08-23 |
0.51.0 |
||
♻️ Introduce |
2023-08-22 |
|||
🚚 Rename |
2023-08-22 |
|||
✨ A function to convert pathlike to Path or UPath inheriting options from root |
2023-08-22 |
|||
🔊 Add more logging to closing SQLite |
2023-08-21 |
|||
🐛 Fix UPath check on Storage init |
2023-08-21 |
|||
🔥 Remove unused environment variable and fix sign up logging |
2023-08-21 |
|||
👷 Fix coverage compute |
2023-08-19 |
|||
👷 Run hub tests from |
2023-08-19 |
|||
👷 Renable linting |
2023-08-17 |
|||
🩹 Create record in user table upon login for existing instance |
2023-08-16 |
0.50.2 |
||
👷 Try fixing coverage compute |
2023-08-16 |
|||
🚑️ Fix loading postgres instances |
2023-08-16 |
0.50.1 |
||
🐛 Fix init in an empty s3 bucket |
2023-08-16 |
0.50.0 |
||
🔥 Remove support for migrating legacy SA instances |
2023-08-16 |
|||
🔥 Remove sqlalchemy as a dependency |
2023-08-16 |
|||
🔥 Remove lnschema-core submodule |
2023-08-16 |
|||
♻️ Refactor delete dialogue |
2023-08-16 |
|||
🚸 Add delete confirmation dialogue |
2023-08-15 |
|||
📝 Move |
2023-08-11 |
|||
🚸 Reformat missing-migrations warning |
2023-08-10 |
0.49.7 |
||
🐛 Fix and test close for read only buckets |
2023-08-10 |
|||
👷 Test configuration with no AWS access |
2023-08-07 |
0.49.6 |
||
👷 Simplify CI setup |
2023-08-07 |
|||
🎨 Use logger.save |
2023-08-07 |
|||
🐛 Fix aws access with no credentials |
2023-08-07 |
|||
🔊 Refactored logging msg |
2023-08-07 |
|||
♻️ Replace |
2023-08-06 |
0.49.5 |
||
🚚 Rename |
2023-08-05 |
|||
⬇️ Upper bound external dependencies |
2023-08-04 |
0.49.4 |
||
🎨 Add |
2023-08-03 |
0.49.3 |
||
✅ Fix init-instance test for sqlite instance |
2023-08-02 |
|||
🎨 Fix |
2023-08-01 |
|||
✨ Propagate kwargs through synchronization functions |
2023-07-31 |
0.49.2 |
||
🐛 Fix local variable ‘db_dsn’ referenced before assignment |
2023-07-30 |
|||
🚸 Show help by default and add –version |
2023-07-30 |
|||
🐛 Fix flawed DBUser logic in |
2023-07-24 |
0.49.1 |
||
🗃️ Enable multiple DB access roles in instances (decompose connection string) |
2023-07-19 |
0.49.0 |
||
💚 Fix instability |
2023-07-19 |
|||
👷 Run CI against the staging environment |
2023-07-18 |
|||
♻️ Simplify |
2023-07-17 |
0.48.8 |
||
🔒️ Increase locker expiration time to 1 week |
2023-07-08 |
0.48.7 |
||
🚸 Import order of schema modules shouldn’t matter |
2023-07-06 |
0.48.6 |
||
🚸 Deal with legacy instances |
2023-07-06 |
0.48.5 |
||
🚸 Raise more errors in API when instance is setup |
2023-07-03 |
0.48.3 |
||
🚸 Silence loggers and close instance during init & load |
2023-07-03 |
0.48.2 |
||
🐛 Fix sqlite file not existing in the bucket error |
2023-06-28 |
0.48.1 |
||
🩹 Do not register storage through |
2023-06-28 |
|||
🐛 Lock cloud sqlite instances on init |
2023-06-27 |
|||
👷 Add local hub tests |
2023-06-26 |
|||
✨ Set s3 region in set.storage |
2023-06-26 |
|||
➖ Simplify deps |
2023-06-21 |
|||
✅ Try to trigger error |
2023-06-20 |
0.47.11 |
||
🔧 Back to UTC |
2023-06-20 |
|||
♻️ Simplify schema validation |
2023-06-18 |
0.47.10 |
||
🎨 Remove |
2023-06-16 |
|||
🍱 Fix legacy data migration |
2023-06-15 |
0.47.9 |
||
✨ Add ability to check for migrations |
2023-06-14 |
0.47.8 |
||
🎨 Updated bionty function imports |
2023-06-14 |
|||
♻️ Different migr strategy |
2023-06-12 |
0.47.7 |
||
🍱 Added migration script from legacy instances |
2023-06-12 |
0.47.5 |
||
🔥 Adapt locker to lock entire lamindb session |
2023-06-11 |
|||
🚑 Only delete bionty sources when bionty is installed |
2023-06-10 |
0.47.4 |
||
🚚 Rename source_key to source |
2023-06-10 |
0.47.3 |
||
⬆️ Rename bionty variables |
2023-06-10 |
0.47.2 |
||
🚑 Removed |
2023-06-09 |
0.47.1 |
||
⬆️ Adapt to bionty naming in 0.18.0 |
2023-06-09 |
|||
🚸 Warn about migrations |
2023-06-08 |
0.47.0 |
||
📝 Refactor guide |
2023-06-08 |
|||
✅ More testing of Bionty |
2023-06-07 |
0.46a5 |
||
♻️ Reorder args of CLI |
2023-06-07 |
|||
♻️ Refactored init & load instance |
2023-06-07 |
|||
💚 Fix dependencies |
2023-06-07 |
|||
♻️ Rename and set empty locker for now |
2023-06-07 |
|||
🚸 Simplify remote SQLite synching & locking |
2023-06-07 |
|||
✨ Setup bionty version tables |
2023-06-07 |
|||
🔊 Better logging |
2023-06-05 |
0.46a4 |
||
💄 Prettier settings file names |
2023-06-04 |
|||
⚡ Bionty versions table & performance improvements |
2023-06-04 |
|||
🔥 Remove all occurances of sqlmodel |
2023-06-04 |
|||
🔥 Delete SQLAlchemy related content |
2023-06-04 |
|||
🔥 Remove alembic migrations infra & fix coverage |
2023-06-04 |
|||
✨ Add migrations management for Django (start breaking SQLAlchemy) |
2023-06-04 |
|||
✨ Extend django to lnschema-bionty |
2023-06-04 |
|||
✨ New id and version in track |
2023-06-02 |
|||
🏗️ Enable Django backend (lamindb) |
2023-06-02 |
|||
🚚 Rename package to |
2023-06-01 |
0.46a2 |
||
🏗️ Add Django backend |
2023-05-31 |
0.46a1 |
||
♻️ Refactor CI |
2023-05-30 |
0.45.0 |
||
🐛 Unlock on uncaught exceptions in ipython |
2023-05-30 |
|||
⬆️ Upgrade to laminhub-rest 0.9.8 |
2023-05-28 |
0.45a4 |
||
⬆️ Upgrade laminhub-rest to 0.9.7 |
2023-05-28 |
0.45a3 |
||
📝 Add setup overview from lamindb |
2023-05-27 |
|||
🔥 Remove schema modules logic from |
2023-05-26 |
0.45a2 |
||
🏗️ Remove SQL-level schema modules |
2023-05-25 |
0.45a1 |
||
✨ Add track command to CLI |
2023-05-23 |
|||
📝 Improve migration docs |
2023-05-22 |
|||
🔊 Use lamin_logger in test_notebooks.py |
2023-05-04 |
|||
Add universal_pathlib to dependencies |
2023-05-02 |
|||
⬆️ Upgrade laminhub-rest to 0.9.4 |
2023-04-28 |
0.44.7 |
||
🚑 Fix load |
2023-04-27 |
0.44.6 |
||
✨ Add |
2023-04-27 |
|||
⬆️ Upgrade laminhub-rest |
2023-04-25 |
0.44.5 |
||
✨ Allow to set additional fsspec kwargs for cloud instances |
2023-04-23 |
0.44.4 |
||
⬆️ Upgrade laminhub-rest to 0.8.2 |
2023-04-22 |
0.44.2 |
||
🚸 New migration deployment logic that also factors in migration ids |
2023-04-21 |
|||
🚸 Mute warning about DB not reachable in init |
2023-04-21 |
|||
🚸 Allow registering local postgres instances on the hub |
2023-04-21 |
0.43.0 |
||
🚸 Add a |
2023-04-20 |
|||
👷 Remove laminhub-rest CI calls |
2023-04-20 |
|||
🚸 Enable non-owner to set storage |
2023-04-19 |
|||
♻️ Restructure hub imports |
2023-04-18 |
|||
⬆️ Upgrade to laminhub_rest 0.8.1 |
2023-04-18 |
0.42.0 |
||
✅ Use nbproject-test directly |
2023-04-18 |
|||
🔊 Clarify access based on locally cached instance metadata |
2023-04-11 |
0.41.0 |
||
🎨 Move setup checks from lamindb here |
2023-04-08 |
0.41rc1 |
||
🔧 Increase configure-aws-credentials version from v1 to v2 |
2023-04-07 |
|||
🚸 Expose |
2023-04-07 |
0.40.2 |
||
➕ Add cloudpathlib back |
2023-04-07 |
0.40.1 |
||
🚸 Rename settings directory to |
2023-04-07 |
0.40.0 |
||
🚸 Expose storage in settings |
2023-04-07 |
|||
♻️ Move storage related code to lndb_storage |
2023-04-05 |
|||
♻️ Refactor migrations |
2023-04-04 |
|||
🧑💻 Enable to load instance from hub using access token |
2023-04-03 |
0.39.2 |
||
⬆️ Upgrade laminhub-rest to 0.7.2 |
2023-03-31 |
0.39.1 |
||
💚 Try to fix CI |
2023-03-30 |
|||
🚸 Check schema version upon init |
2023-03-30 |
0.39.0 |
||
🚸 Enforce order of schema modules for migration |
2023-03-27 |
0.38.1 |
||
💚 Improve e2e migrations guide |
2023-03-26 |
0.38.0 |
||
🚸 Update |
2023-03-25 |
|||
🎨 Improve e2e migrations testing |
2023-03-25 |
|||
🎨 Improve switching logic from and to sqlite |
2023-03-22 |
0.37.9 |
||
✅ Add tests for migration unit tests |
2023-03-22 |
0.37.8 |
||
🚑 Restore previous criterion to test postgres vs sqlite |
2023-03-22 |
0.37.7 |
||
🚸 Also delete current instance settings |
2023-03-21 |
0.37.6 |
||
📝 Prettify init instance guide |
2023-03-21 |
|||
💚 Fix CI |
2023-03-21 |
0.37.5 |
||
⬆️ Migrate to bionty 0.9 |
2023-03-20 |
0.37.5rc1 |
||
🚸 Handle instance permissions during |
2023-03-14 |
|||
🐛 Fix |
2023-03-09 |
0.37.4 |
||
⬆️ Upgrade to laminhub_rest 0.6.1 |
2023-03-09 |
0.37.3 |
||
⬆️ Upgrade lnschema-bionty |
2023-03-09 |
0.37.2 |
||
✅ Test lamindb_setup in staging environment |
2023-03-08 |
|||
👷 Enable testing using a specific environment |
2023-03-07 |
|||
⬆️ Upgrade laminhub-rest |
2023-03-07 |
|||
⬆️ Upgrade lamindb |
2023-03-07 |
|||
⬆️ Upgrade lamindb |
2023-03-07 |
0.37.1 |
||
📌 Pin laminhub-rest |
2023-03-07 |
|||
📝 Reduce visual noise in migrate guide |
2023-03-06 |
0.37.0 |
||
📝 Fix docs build |
2023-03-05 |
|||
🐛 Fix resolution of storage root paths for local instances |
2023-03-05 |
|||
📝 Replace |
2023-03-01 |
|||
✨ Reload |
2023-03-01 |
0.36.0 |
||
👷 Check laminci versions |
2023-03-01 |
|||
📝 Fix class ref in settings |
2023-02-28 |
|||
🚚 Rename lamindb_setup to lamin in guide & faq |
2023-02-27 |
|||
🎨 Rename root_str to root_as_str |
2023-02-25 |
|||
✨ Add root_str property to Storage |
2023-02-25 |
|||
🚚 Rename lamindb_setup CLI to lamin |
2023-02-24 |
|||
🚚 Move code to laminci |
2023-02-23 |
|||
🐛 Fix CI docs upload |
2023-02-22 |
0.35.3 |
||
👷 Upload docs artifacts |
2023-02-22 |
|||
👷 Add CI helper for uploading docs |
2023-02-22 |
0.35.2 |
||
🐛 Fix trailing slash in storage table |
2023-02-22 |
0.35.1 |
||
🐛 Reinit Locker on user or storage change |
2023-02-22 |
|||
🎨 Use resolve() instead of absolute() |
2023-02-21 |
|||
🔧 Parse config for CI to retrieve anon key |
2023-02-21 |
0.35.0 |
||
✨ Enable setup of local auth instance |
2023-02-20 |
0.35rc2 |
||
⚡️ Replace |
2023-02-18 |
|||
💄 Fix styling of migrate guide |
2023-02-17 |
|||
📝 Polish migration guide |
2023-02-17 |
|||
🐛 Fix nox |
2023-02-16 |
0.34.1 |
||
🎨 Deprecate |
2023-02-16 |
0.34.0 |
||
🎨 Introduce |
2023-02-16 |
|||
✏️ Fix example |
2023-02-16 |
|||
🚸 Proper client server check |
2023-02-16 |
0.33.0 |
||
📝 Migration guide |
2023-02-16 |
|||
⬆️ Upgrade hub to 0.4.0 |
2023-02-15 |
0.32.6 |
||
🔧 Add |
2023-02-15 |
0.32.5 |
||
♻️ Adapt migration_id test for hub |
2023-02-15 |
|||
🐛 Also update dev-level ORMs |
2023-02-15 |
|||
🔥 Remove synchronization warnings mute in setup_schema |
2023-02-15 |
|||
🐛 Fix a synchronization issue during init of remote sqlite |
2023-02-15 |
|||
🐛 Fix error raising for |
2023-02-14 |
0.32.4 |
||
💚 Fix test_migrate_clones_postgres |
2023-02-14 |
0.32.3 |
||
🚑 Generate all migrate files before migrate |
2023-02-14 |
0.32.2 |
||
🚑 Fix import and simplify params |
2023-02-14 |
0.32.1 |
||
⬆️ Upgrade |
2023-02-13 |
|||
🚚 Rename package from |
2023-02-12 |
0.32.0 |
||
🎨 Enable using the current instance for generating migration script |
2023-02-10 |
0.31.0 |
||
🎨 Generate alembic.ini before before check migrate |
2023-02-10 |
|||
✨ Added migration module |
2023-02-10 |
|||
🐛 Fix access to newly created instances on s3 due to region |
2023-02-09 |
|||
🚸 Validate instances at |
2023-02-09 |
|||
🚸 Add error if client version schema package version is lower than deployed db schema module version |
2023-02-09 |
|||
♻️ Remove _sbclient suffix |
2023-02-06 |
|||
🚸 Better UX |
2023-02-06 |
|||
🐛 Fix check_versions |
2023-02-06 |
0.30.14 |
||
🚑 Fix login on new environments |
2023-02-06 |
0.30.13 |
||
🐛 Fix modified for gcs for locker |
2023-02-05 |
|||
✨ Add rich string representation for InstanceSettings class |
2023-01-31 |
0.30.12 |
||
✨ Add rich string representation for UserSettings class |
2023-01-31 |
|||
📌 Pin deps for aiobotocore to fix resolution |
2023-01-27 |
0.30.11 |
||
⬆️ Upgrade laminhub-rest to 0.1.4 |
2023-01-27 |
|||
⬆️ Cleaned up dependencies |
2023-01-27 |
|||
📌 Pin s3fs and gcsfs to the latest versions |
2023-01-25 |
0.30.10 |
||
🐛 Use |
2023-01-24 |
0.30.9 |
||
🦺 Additional safety measures for locker |
2023-01-24 |
|||
🐛 Pin s3fs version |
2023-01-23 |
0.30.8 |
||
♻️ Refactor locker and change locking logic to explicit locks |
2023-01-21 |
|||
✅ Delete instances created during failed tests |
2023-01-21 |
|||
🚸 Fix messing with cached user settings upon failed signup |
2023-01-20 |
0.30.7 |
||
🩹 Fix creation of storage dir upon re-init |
2023-01-20 |
|||
📝 Move load guide to the front |
2023-01-20 |
|||
🐛 Restore sqlite db synchronization on |
2023-01-16 |
|||
🐛 Fix migration config |
2023-01-16 |
0.30.6 |
||
🎨 Document ontology versioning and remove legacy sql |
2023-01-16 |
0.30.5 |
||
✅ Test schema modules on postgres |
2023-01-16 |
|||
🐛 Fix another occurence |
2023-01-16 |
0.30.4 |
||
🔧 Fix nox for testing migrations |
2023-01-16 |
0.30.3 |
||
⬆️ Upgrade laminhub-rest |
2023-01-16 |
0.30.2 |
||
🔥 Remove atexit |
2023-01-16 |
|||
⬆️ Upgrade laminhub_rest |
2023-01-16 |
0.30.1 |
||
🏗️ Separate hub components out to turn lndb-setup into pure client |
2023-01-16 |
0.30.0 |
||
🚚 Rename |
2023-01-14 |
|||
🐛 Fix hub interaction |
2023-01-14 |
|||
🩹 Patch cloning |
2023-01-13 |
0.30a1 |
||
🐛 Prevent initializing an instance with a db already used |
2023-01-13 |
|||
🥅 Properly check if an instance exists during init |
2023-01-13 |
|||
♻️ Refactor storage property |
2023-01-12 |
|||
🎨 Refactor dialect property |
2023-01-12 |
|||
🐛 Fix checking for non remote instance loaded from hub |
2023-01-12 |
|||
🐛 Prevent loading non remote instance from hub |
2023-01-12 |
|||
🐛 Prevent loading non remote instance from hub |
2023-01-12 |
|||
🐛 Fix |
2023-01-11 |
|||
🎨 Simplify loading |
2023-01-11 |
|||
🗃️ Stop tracking non remote instance in hub |
2023-01-11 |
|||
⬆️ Upgrade lnschema core |
2023-01-10 |
0.29.0 |
||
✅ Ensure each deleted instance name are specific to a CI run |
2023-01-10 |
|||
✅ Ensure instances deleted during tests are not used anywhere else |
2023-01-10 |
|||
⬇️ Downgrade lnschema-core |
2023-01-10 |
|||
🐛 Load settings for delete an instance if settings file cannot be found locally |
2023-01-09 |
|||
✨ Load remote instance |
2023-01-09 |
|||
♻️ Refactor delete function |
2023-01-06 |
|||
🐛 Add schema field to instance metadata |
2023-01-06 |
|||
🐛 Make delete command compatible with delete function |
2023-01-06 |
|||
✨ Command delete for the CLI |
2023-01-05 |
|||
🍱 Clean up & complete test instances |
2023-01-05 |
0.28.1 |
||
✨ Output information about current user in |
2023-01-05 |
|||
✨ Add command for generating migrations |
2023-01-05 |
|||
📝 Added swarm_test instance |
2023-01-05 |
|||
🐛 Migration skipped return None |
2023-01-05 |
0.28.0 |
||
📝 Add a clone guide |
2023-01-04 |
|||
🚸 Less dangerous error message for deleted remote sqlite file |
2023-01-04 |
|||
🍱 Add hub schema |
2023-01-04 |
|||
✨ Enable to specify name when setup a local test postgres |
2023-01-04 |
|||
✨ Mutual exclusion for a sqlite db file |
2022-12-27 |
|||
📝 Move |
2022-12-22 |
|||
🎨 Remove implicit casting to boolean |
2022-12-20 |
0.27.0 |
||
🐛 Fix CLI |
2022-12-19 |
|||
🎨 Refactor push instance function |
2022-12-17 |
|||
🎨 Add owner handle in instance settings file name |
2022-12-17 |
|||
🐛 Catch all cloudpath & client occurences for gs |
2022-12-16 |
0.26.3 |
||
🎨 Alleviate inconsistency in |
2022-12-15 |
0.26.2 |
||
🎨 Cache owner |
2022-12-15 |
|||
♻️ Refactor set & show |
2022-12-15 |
0.26.1 |
||
🚸 Enable to work with gcloud login |
2022-12-15 |
0.26.0 |
||
✨ Add info command to CLI |
2022-12-15 |
|||
🚸 Improve logging for instance initialization |
2022-12-15 |
|||
📝 Create FAQ |
2022-12-15 |
|||
✨ Enable to switch storage for postgres |
2022-12-15 |
|||
👷 Remove |
2022-12-15 |
|||
🐛 Fix migrations e2e testing |
2022-12-14 |
0.25.3 |
||
🩹 Fix sync warnings on instance creation |
2022-12-13 |
|||
📝 Improve CLI init docs |
2022-12-13 |
|||
🐛 Fix dbconfig |
2022-12-13 |
0.25.2 |
||
✅ Add test for postgres |
2022-12-13 |
|||
🐛 Fix missing return |
2022-12-13 |
0.25.1 |
||
🎨 Infer db file name from instance name |
2022-12-13 |
|||
🎨 Drop name property |
2022-12-13 |
|||
✅ Test google cloud bucket |
2022-12-13 |
|||
🚸 Persist instance name during init |
2022-12-13 |
|||
✅ Add a new test for custom instance name |
2022-12-12 |
|||
🎨 Instance initialization with url argument |
2022-12-12 |
|||
👷 Check whether scripts dir exists |
2022-12-12 |
|||
👷 Extend nox |
2022-12-12 |
0.25.0 |
||
🐛 Restore synchronization of the sqlite db file |
2022-12-11 |
|||
✅ Test for custom instance name |
2022-12-11 |
|||
✨ Enable to specify name during instance initialization |
2022-12-10 |
|||
🎨 Simplify nox tools |
2022-12-09 |
0.24.4 |
||
🚸 Better error logging login |
2022-12-08 |
0.24.3 |
||
🐛 Fix typo |
2022-12-08 |
0.24.2 |
||
👷 Configure test instance with schemas |
2022-12-08 |
0.24.1 |
||
✨ Added bionty versioning |
2022-12-08 |
0.24.0 |
||
🎨 Add more nox utilities |
2022-12-08 |
|||
♻️ Clean up migration testing framework |
2022-12-08 |
0.23.1 |
||
✨ Enable settings to be specific for an environment |
2022-12-08 |
0.23.0 |
||
🎨 Drop dynamic settings logic |
2022-12-08 |
|||
✨ Expand |
2022-12-07 |
0.22.2 |
||
💚 Fix migration & additional testing primitive |
2022-12-07 |
0.22.1 |
||
✨ Add a close command |
2022-12-05 |
0.22.0 |
||
🎨 Refactor |
2022-12-05 |
|||
🐛 Update site base url for test env |
2022-12-03 |
0.21.0 |
||
🎨 More clarity around schema names |
2022-11-29 |
|||
♻️ Refactor assets |
2022-11-29 |
|||
🐛 Fix return codes CLI |
2022-11-28 |
|||
⬆️ Upgrade |
2022-11-28 |
0.20.4 |
||
🐛 Propagate migrate |
2022-11-28 |
0.20.3 |
||
🚸 Reload schemas when switching between sqlite & postgres |
2022-11-28 |
0.20.2 |
||
♻️ Refactor |
2022-11-28 |
|||
🎨 Improve migration testing framework |
2022-11-28 |
0.20.1 |
||
✨ Migrations testing framework |
2022-11-27 |
0.20.0 |
||
⬆️ Upgrade |
2022-11-27 |
0.19.0 |
||
🍱 Clone postgres to test DB |
2022-11-26 |
|||
📝 Update docstring |
2022-11-26 |
|||
✨ Add clone capability for testing migrations |
2022-11-25 |
|||
✨ Enable dynamic connector file |
2022-11-24 |
|||
🐛 Look for a unique instance name by owner |
2022-11-24 |
|||
✨ Add |
2022-11-23 |
0.18.0 |
||
✨ Multi environments setup |
2022-11-23 |
0.17.0 |
||
✨ Enable to skip migration |
2022-11-19 |
0.16.0 |
||
🔥 Do not enforce foreign key integrity on sqlite |
2022-11-14 |
0.15.0 |
||
🚸 Fixed warning |
2022-11-03 |
0.14.1 |
||
💚 Fix static lnschema_core import |
2022-11-03 |
0.14.0 |
||
✨ Modularize SQL schema & camel-case Python table classes |
2022-11-03 |
|||
🩹 Hide hub error in a thread on Windows |
2022-10-30 |
|||
🐛 Add entry in user_instance table |
2022-10-27 |
0.13.2 |
||
🐛 Fix instance exists check |
2022-10-26 |
0.13.1 |
||
🔥 Remove lamindb_setup hub depency |
2022-10-26 |
0.13.0 |
||
🎨 Remove lndb_hub dependency |
2022-10-26 |
|||
✨ Enable dev settings |
2022-10-26 |
|||
✨ Push instance during setup |
2022-10-22 |
|||
🐛 Skip migration if None |
2022-10-20 |
0.12.2 |
||
🩹 Fix password error message at login |
2022-10-20 |
|||
✨ Enable to bypass instance settings file |
2022-10-18 |
|||
✨ Store access token |
2022-10-17 |
|||
🐛 Fix sqlite file update |
2022-10-12 |
0.12.1 |
||
🚸 Only write migration version upon schema creation |
2022-10-12 |
|||
🚸 Enforce foreign key constraints in SQLite |
2022-10-10 |
0.12.0 |
||
📝 Overhaul docs |
2022-10-10 |
|||
🚸 Fixed migration retrieval warning |
2022-10-10 |
0.11.0 |
||
🐛 Populate user name |
2022-10-10 |
|||
✨ Add drylab schema |
2022-10-10 |
|||
🚚 Rename |
2022-10-10 |
|||
✨ Add user name to settings |
2022-10-10 |
|||
🐛 Fix incompatibility with postgres |
2022-10-10 |
0.10.1 |
||
✨ Track user name |
2022-10-10 |
|||
🐛 Redirect user after signup |
2022-10-07 |
0.10.0 |
||
🐛 Fix storage not inserted during instance setup |
2022-10-07 |
|||
🩹 Cast base settings dir as Path |
2022-10-04 |
0.9.4 |
||
🏗️ Enable other settings location |
2022-10-04 |
0.9.2 |
||
🔊 Better logging during instance creation |
2022-10-03 |
|||
🐛 Ensure compat with lnbfx |
2022-10-03 |
0.9.1 |
||
✨ Implement migrations for all schema modules |
2022-10-03 |
0.9.0 |
||
✨ Add docking schema module |
2022-10-03 |
|||
🏗️ Make setup compatible with postgres |
2022-10-03 |
0.8.3 |
||
🔥 Removed |
2022-09-28 |
0.8.2 |
||
🚑 Fix CLI load |
2022-09-26 |
0.8.1 |
||
🚸 Make load arg positional |
2022-09-26 |
0.8.0 |
||
🎨 Explicitly treat no schema modules as None |
2022-09-24 |
|||
🚸 Do not error if local file is newer, print warning instead |
2022-09-24 |
|||
🎨 Simplify version selection |
2022-09-24 |
|||
✅ Test bionty migration |
2022-09-22 |
0.7.1 |
||
✨ Track versions and migrations of bionty |
2022-09-22 |
|||
🚚 Rename |
2022-09-21 |
0.7.0 |
||
✨ Automatic migration for core schema module |
2022-09-21 |
|||
✨ Populate migration upon instance init |
2022-09-18 |
|||
🍱 Added swarm biosample schema |
2022-09-08 |
0.6.3 |
||
✅ Add GCP test bucket |
2022-09-06 |
|||
🚸 Call out storage location |
2022-09-05 |
|||
✨ Automatically add storage region |
2022-09-05 |
0.6.2 |
||
🚚 Rename guides to guide |
2022-09-05 |
|||
✅ Make schema tests safer |
2022-08-30 |
|||
🐛 Fix bugs related to setting up storage |
2022-08-30 |
|||
🆙 Updated dependencies |
2022-08-26 |
0.6.1 |
||
✨ Make tables in schema modules configurable |
2022-08-25 |
0.6.0 |
||
🚸 Safer logging and errors for out-of-date schema |
2022-08-24 |
|||
🎨 Use id to reference storage |
2022-08-23 |
0.5.5 |
||
✨ Track cloud workspace location |
2022-08-20 |
0.5.4 |
||
🚚 Rename schema modules |
2022-08-19 |
0.5.3 |
||
🔧 Switch to dedicated lndb-setup test bucket |
2022-08-18 |
0.5.2 |
||
🔊 Fix logging error |
2022-08-18 |
|||
✨ Integrate instance setup with lndb-bfx-pipeline |
2022-08-18 |
|||
🔊 Correct login error message |
2022-08-17 |
|||
🧱 Settings with absolute path |
2022-08-10 |
0.5.1 |
||
✨ Add schema version check back in |
2022-08-03 |
0.5.0 |
||
🚸 Safe login in case of partially deleted instance |
2022-08-02 |
0.4.3 |
||
🐛 Log user into instance db |
2022-08-02 |
0.4.2 |
||
🚸 Remove handle from signup |
2022-08-02 |
|||
✅ Test edge case |
2022-08-01 |
0.4.1 |
||
📝 Renamed top-level API functions to match CLI names |
2022-08-01 |
0.4.0 |
||
✨ Require registering a |
2022-08-01 |
|||
🚚 Rename |
2022-08-01 |
|||
🩹 Import core schema at setup time |
2022-07-31 |
0.3.1 |
||
⬆️ Upgrade to |
2022-07-31 |
0.3.1 |
||
🚚 Make storage public |
2022-07-26 |
0.3.0 |
||
🚸 Expose settings through one |
2022-07-26 |
|||
♻️ Modularize settings & setup across files, increase coverage, set up documentation |
2022-07-26 |
|||
✨ Allow switching schema modules |
2022-07-25 |
0.2.0 |
||
🚚 Add table construction & database engine |
2022-07-25 |
0.1.1 |
||
🚚 Move code from lamindb here |
2022-07-24 |
0.1.0 |